PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049559
Common NameLOC102577692
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 299aa    MW: 33481.4 Da    PI: 6.1636
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049559genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3076134259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  PGSC0003DMP400049559  76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 134
                           69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3172136IPR003657WRKY domain
SuperFamilySSF1182902.22E-2674136IPR003657WRKY domain
SMARTSM007744.2E-3675135IPR003657WRKY domain
PROSITE profilePS5081132.40976136IPR003657WRKY domain
PfamPF031063.7E-2677134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDGRFNNFFV SEQEDSENSP ENSSDSPRSG LFNDNKMMTS TSSPKRRRSI EKRVVSVPIK  60
EVEGSKMKGE ISMPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRADP  120
NMLVVTYSCE HNHPWPASRN NQHNHRTSCI INNNTKTKMK TIASLTTTTI IASTTISDIA  180
VSKEKITSDF TRPSEPNSDE KFVNLSESSS SLISANEFGW FSDLIECTST TMLESPILTE  240
VDCDIDMSST LTMREEDVSL FADLGELPEC STVFGRGMME RDEERRRLSL TPWCGTTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-19761361574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569170.0EU056917.1 Solanum tuberosum WRKY transcription factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358112.10.0PREDICTED: WRKY transcription factor 5 isoform X1
SwissprotQ9LP562e-73WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLM1CRP90.0M1CRP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000732670.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-61WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]